Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSEKNAYAKSGVDVEAGYEVVERIKKHVARTERAGVMGALGGFGGMFDLSQTGVKEPVLISGTDGVGTKLMLAIKY-------DKHDTIGQDCVAMCVNDIIAAGAEPLYFL-DYVATGKN--EPAKLEQVVAGVAEGC---VQ--AGAALIGGETAEMPGMYGEDDYDLAGFAVGVAEKSQIIDGSKVKEGDILLGLASSG-----------IHSNGYSLVRRVFADYTG------DEVL---------------PE--LEGKQLKDVLLEPTRIYVKAALPLIK--EELVNGIAHITGGGFIENVPRMFADDLAAEIDEDKVPVLPIFKALEKYGDIKHEEMFEIFNMGVGLMLAVSPENVNRVKELL---DEPVYEIGRIIKKADASVVIK |
| 3MDO Chain:A ((25-380)) | --------------------------NIDKG------IFPKAFCKIIPDILGGDPEYCNIMHADGAGTKSSLAYMYWKETGDLSVWKGIAQDALIMNIDDLLCVGAVDNILVSSTIGRNKLLVPGEVISAIINGTDELLAELREMGVGCYATGGETADVGDLVR--TIIVDSTVTCRMKRSDVIDNKNIQGGDVIVGLASSGQATYEKEYNGGMGSNGLTSARHDVFSKYLAKKYPESYDAAVPKELVYSGGLKLTDKIEELGIDAGKMVLSPTRTYAPVIKVLLDKLRSQIHGMVHCSGGAQT-KVMHFVE-NKRVTKD-NLFPIPPLFRTIQEQSGTDWSEMYKVFNMGHRMEIYIAPEHAEEVIGISKSFGIDAQIVGFVEEADKNELIIE |
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General information:
TITO was launched using:
| RESULT:
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Template: 3MDO.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -199094 for 2530 contacts (-78.7/contact) +
2D Compatibility (PS) -31730 + (NN) -6248 + (LL) 2748
1D Compatibility (HY) -10400 + (ID) 3500
Total energy: -248224.0 ( -98.11 by residue)
QMean score : 0.450
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