Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMTMKQFEIAAIPGDGVGKEVVAAAEKVLHTAAEVHGGLSFSFTAFPWSCDYYLE-HGKMMPEDGIHTLTQFEAVFLGAVGNPKLVPDHISLWGLLLKIRRELELSINMRPAKQMAGITSPLLHPNDFDFVVIRENSEGEYSEVGGRIHRGDDEIAIQNAVFTRKATERVMRFAFELAKKRR-SHVTSATKSNGIYHAMPFWDEVFQQTAADYSGIETSSQHIDALAAFFVTRPETFDVIVASNLFGDILTDISSSLMGSIGIAPSANINPSGKYPSMFEPVHGSAPDIAGQGLANPIGQIWTAKLMLDHFGEEELGAKILDVMEQVTADGI-KTRDIGGQ---STTAEVTDEICSRLRKL
2D1C Chain:A ((18-357))---GRKLITVIPGDGIGPECVEATLKVLEAA-----KAPLAYEVREAGASVFRRGIASGVPQETIESIRKTRVVLKGPLETPVG-YGEKS---ANVTLRKLFETYANVRPVREFPNVPTPYAG-RGIDLVVVRENVEDLYAGIEHMQTPS---VAQTLKLISWKGSEKIVRFAFELARAEGRKKVHCATKSNIMKLAEGTLKRAFEQVAQEYPDIEAVHIIVDNAAHQLVKRPEQFEVIVTTNMNGDILSDLTSGLIGGLGFAPSANIGNE---VAIFEAVHGSAPKYAGKNVINPTAVLLSAVMMLRYLEEFATADLIENALLYTLEEGRVLTGDVVGYDRGAKTTEYTEAIIQNLGK-


General information:
TITO was launched using:
RESULT:

Template: 2D1C.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1973 -163428 -82.83 -489.30
target 2D structure prediction score : 0.69
Monomeric hydrophicity matching model chain A : 0.76

3D Compatibility (PKB) : -82.83
2D Compatibility (Sec. Struct. Predict.) : 0.69
1D Compatibility (Hydrophobicity) : 0.76
QMean score : 0.427

(partial model without unconserved sides chains):
PDB file : Tito_2D1C.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-2D1C-query.scw
PDB file : Tito_Scwrl_2D1C.pdb: