Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGMDQQPNPPDVDAFLDSTLVGDDPALAAALAASDAAELPRIAVSAQQGKFLCLLAGAIQARRVLEIGTLGGFSTIWLARGAGPQGRVVTLEYQPKHAEVARVNLQRAGVADRVEVVVGPALDTLPTL---AGGPFDLVFIDADKENNVAYIQWAIRLARRGAVIVVDNVIRGGGILAES-DDADAVAARRTLQMMGEHPGLDATAI-QTVGRKGWDGFALALVR
3DUW Chain:A ((5-222))
------ETWTAVDQYVSDVLIPKDSTLEEVLQVNAAANLPAHDVSPTQGKFLQLLVQIQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDFIFIDADKQNNPAYFEWALKLSRPGTVIIGDNVVREGEVIDNTSNDPRVQGIRRFYELIAAEPRVSATALQTVG-SKGYDGFIMAVVK
General information:
TITO was launched using:
RESULT:
Template:
3DUW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -138085 for 1774 contacts (-77.8/contact) +
2D Compatibility (PS) -23702 + (NN) -13322 + (LL) 236
1D Compatibility (HY) -19200 + (ID) 5050
Total energy: -199123.0 ( -112.25 by residue)
QMean score : 0.496
(partial model without unconserved sides chains):
PDB file :
Tito_3DUW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3DUW-query.scw
PDB file :
Tito_Scwrl_3DUW.pdb
: