Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MAKAKFQRTKPHVNIGTIGHVDHGKTTLTAAITKVLHDKFPDLNETKAFDQIDNAPEERQRGITINIAHVEYQT-----------------------DKRHYAHVDAPGHADYIKNMITGAAQMDGAILVVAATDG-PMPQTREHVLLARQVGVPYILVALNKADAVDDEELLELVEMEVRELLAAQEFDEDAPVVRVSALKALEGDAKWVASVEELMNAVDESIPDPVRETDKPFLMPVEDVFTITG----RGTVVTGRVERGVINVNEEVEIVGIRP---S------TTKTTVTGVEMFRKLLDQGQAGDNVGLLLRG---VKREDVERGQVVTKPGT-TTPHTEFEGQVYILSKDEGGRH----TPFFNNYRPQFYFRTTDVTGVVTLPEGTEMVMPGDNTNISVKLIQPVAMDEGLRFAIRE----GGRTVGAGRVTKIIK |
| 1KK1 Chain:A ((6-410)) | -------SRQAEVNIGMVGHVDHGKTTLTKALTGVWT---------------D--SEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKE-KALENYRQIKEFIEGTVAE-NAPIIPISALHG--------ANIDVLVKAIEDFIPTPKRDPNKPPKMLVLRSFDVNKPGKLVGGVLDGSIVQGKLKVGDEIEIRPGVPYEEHGRIKYEPITTEIVSLQAGGQFVEEAYPGGLVGVGTKLDPYLTKGDLMAGNVVGKPGKLPPVWDSLRLEVHLLERVV--EQELKVEPIKRKEVLLLNVGTARTMGLVTGLG---------KDEIEVKLQIPVCAEPGDRVAISRQIGSRWRLIGYGIIKE--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1KK1.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -145448 for 2955 contacts (-49.2/contact) +
2D Compatibility (PS) -38184 + (NN) -15862 + (LL) 2812
1D Compatibility (HY) -18400 + (ID) 5900
Total energy: -220982.0 ( -74.78 by residue)
QMean score : 0.462
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