Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLITAIVKPFTLDDVKTSLEDAGVLGMTVSEIQGYGRQKGHTEVYRGAEYSVDFVPKVRIEVVVDDSIVDKVVDSIVRAARTGKIGDGKVWVSPVDTIVRVRTGERGHDAL
4AFF Chain:A ((1-112))
MKKIEAIIRPFKLDEVKIALVNAGIVGMTVSEVRGFGRQK------RGSEYTVEFLQKLKLEIVVEDAQVDTVIDKIVAAARTGENGDGKIFVSPVDQTIRIRTGEKNADAI
General information:
TITO was launched using:
RESULT:
Template:
4AFF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -65459 for 677 contacts (-96.7/contact) +
2D Compatibility (PS) -11774 + (NN) -3761 + (LL) 312
1D Compatibility (HY) -12400 + (ID) 3150
Total energy: -96232.0 ( -142.14 by residue)
QMean score : 0.591
(partial model without unconserved sides chains):
PDB file :
Tito_4AFF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4AFF-query.scw
PDB file :
Tito_Scwrl_4AFF.pdb
: