Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MANTDRPALPHKRAVPPSRADSGPRRRRTKLLDAVAGFGVTLGSMFKKTVTEEYPERPGPVAARYHGRHQLNRYPDGLEKCIGCE-----LCAWACPADAIYVEGADNTEEERFSPGERYGRVYQINYLRCIGCGLCIEACPTRALTMTYDYELADDNRADLIYEKDRLLAPLLPEMAAPPHPRTPGATDKDYYLGNVTAEGLRGVRESQTTGDSR |
1JNR Chain:B ((6-69)) | ----------------------------------------------------------------------------NPEKCDGCKALERTACEYICPNDLMTLDKEKM-------------KAYNREPDMCWECYSCVKMCPQGAIDVRGYVD--------------------------------------------------------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 1JNR.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -44748 for 355 contacts (-126.1/contact) +
2D Compatibility (PS) -5879 + (NN) -496 + (LL) 6276
1D Compatibility (HY) -2800 + (ID) 800
Total energy: -48447.0 ( -136.47 by residue)
QMean score : 0.442
|
|
|