Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTPALVVGPAAWHAVHVTQSSSAITPGQTAELYPGDIKSVLLTAEQIQARIAELGEQIGNDYRELSATTGQDLLLITVLKGAVLFVTDLARAIPVPTQFEFMAVSSYGSSTSSSGVVRILKDLDRDIHGRDVLIVEDVVDSGLTLSWLSRNLTSRNPRSLRVCTLLRKPDAVHANVEIAYVGFDIPNDFVVGYGLDYDERYRDLSYIGTLDPRVYQ
3ACD Chain:A ((4-179))
-------------------------------MFTPGNGPVQISAEAIKKRVEELGGEIARDYQG------KTPHLICVLNGAFIFMADLVRAIPLPLTMDFIAIS------------ELLKDLRLPIHGRDVIVVEDIVDTGLTLSYLLDYLEARKPASVRVAALLSKPSRRQVEVPIHYLGFEIEDAYVYGYGLDRAQFDRNLPFITSIRPE---
General information:
TITO was launched using:
RESULT:
Template:
3ACD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -147404 for 1291 contacts (-114.2/contact) +
2D Compatibility (PS) -17988 + (NN) -7342 + (LL) 2812
1D Compatibility (HY) -20000 + (ID) 3750
Total energy: -193672.0 ( -150.02 by residue)
QMean score : 0.634
(partial model without unconserved sides chains):
PDB file :
Tito_3ACD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3ACD-query.scw
PDB file :
Tito_Scwrl_3ACD.pdb
: