Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSAPVEALFQPFRLGALELPTRVVMAPMTRNFSP-GGVPNAKVVEYYRRRAAAGVGLIVSEGTTVGHKAANGYPNVPRFYGEDALAGWKQVVDAVHAEGGRIVPQLWHVGSVRRLGVEPDASVPGYGPMEKAKD----------GKVLVHGMSKADIQEVIAAFAQAARDAQAIGMDGVEIHGAHGYLIDQFFWEGSNQRDDEYGGSLANRSRFAVELVRAVRAAVGADFPIIFRFSQWKQQDY-SARLVETPEGLREFLAPLVEAGVDIFHCSTRRFWIPEFEGSELNLAGWTRELTGKPTITVGNVGLDGSEFLQFFGKTDEVAQPASIDGLVERLDKGEFDLVAVGRALLVDPEWAVKVREGRIGDIKPFSREALASLV |
| 3GKA Chain:A ((9-343)) | ----MPSLFDPLTIGDLTLANRIIMAPLTRARAGDTRTPNALMARYYAERAS--AGLIISEATSVTPQG-VGYASTPGIWSPEQVDGWRLVTDAVHAAGGRIFLQLWHVGRVSDPVFL-DGALP-VAPSAIAPGGHVSLVRPQRPYVTPRALELDEIPGVVAAFRRGAENARAAGFDGVEVHGANGYLLDQFLQDSANRRTDAYGGSIENRARLLLEVVDAAIDVWS-AARVGVHLAPRGDA-HTMGDS-DPAATFGHVARELGRRRIAFLFARESF------GG--DAIGQQLKAAFGGPFIVNENF-TL------------DSAQ--------AALDAGQADAVAWGKLFIANPDLPRRFKLNA--PLNEPNAATFYAQG |
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General information:
TITO was launched using:
| RESULT:
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Template: 3GKA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -158548 for 2957 contacts (-53.6/contact) +
2D Compatibility (PS) -35483 + (NN) -15654 + (LL) 1536
1D Compatibility (HY) -17600 + (ID) 5200
Total energy: -230949.0 ( -78.10 by residue)
QMean score : 0.615
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