Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSFRKTLLITGASSGFGQALAREALDAGHRVVGTVRSEEARSALEAV-----APGQAFGRLLDVTDLAAIEPTVAAIERDIGPLDVLVNSAGYGHEGILEESPLAEMRRQFEVNLFGAVAMIQAVLPYMRRR------RRGHILNITSMGGYITMPGIAYYCGSKFALEGVSEALGKEVAGLGIAVTAVAPGSFRTDWAGRSMVRSPRTIADYDALFDPVRQARQEKSGKQPGDPRKAARAMLQAIDAENPPAHLLLGSDALGLVRQKLKALEEEIAAWEEVTRSTDG |
3IOY Chain:A ((4-279)) | -FAGRTAFVTGGANGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVEARFGPVSILCNNAGVNLFQPIEESSYDDWDWLLGVNLHGVVNGVTTFVPRMVERVKAGEQKGGHVVNTASMAAFLAAGSPGIYNTTKFAVRGLSESLHYSLLKYEIGVSVLCPGLVK------------------------------AGVHEFGMEPDVIGARVIEAMKAN--RLHIFSHPDHKEELREVFDEIIAEYQDYPKDPGYDQR |
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General information:
TITO was launched using:
| RESULT:
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Template: 3IOY.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -120487 for 1936 contacts (-62.2/contact) +
2D Compatibility (PS) -26355 + (NN) -15815 + (LL) 1948
1D Compatibility (HY) -14000 + (ID) 2850
Total energy: -177559.0 ( -91.71 by residue)
QMean score : 0.516
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