Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQNILISGAASGIGAASARLFHRRGWRVGLLDIDAEALRGLAAQLPGAWHRAVDVSEPDAVGEALAQFCADGRLRLLFNCAGVLRFGRFEEVALEDHARLLAINLHGVLNCCHAAFPFLRAT-PQAQVLNMGSASGLYGVPEMAVYSASKFAVRGLTEALELEWRRHGIRVADLMPPFVRTPMVAGQAYQPP------VLRRLGLRLDAEDIAEAAWRHAHSRRVHRPVGGLFTALYWAGQLSPPWVNRAVMAWLSRG
1CYD Chain:A ((7-229))
GLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKECPGIEPVCVDLGDWDATEKALGG---IGPVDLLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSSMVAHVTFPNLITYSSTKGAMTMLTKAMAMELGPHKIRVNSVNPTVVLTDMGKKVSADPEFARKLKERHPLRKFAEVEDVVNSILFLLSDRSASTSGGGILVDAGYLAS-----------------
General information:
TITO was launched using:
RESULT:
Template:
1CYD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -146410 for 1762 contacts (-83.1/contact) +
2D Compatibility (PS) -22820 + (NN) -6586 + (LL) 1308
1D Compatibility (HY) -9600 + (ID) 2850
Total energy: -186958.0 ( -106.11 by residue)
QMean score : 0.516
(partial model without unconserved sides chains):
PDB file :
Tito_1CYD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1CYD-query.scw
PDB file :
Tito_Scwrl_1CYD.pdb
: