Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MAETQGGDVLVSFRGVQKSYDGETLIVKDLNLDIRKGEFLTLLGPSGSGKTTSLMMLAGFETPTAGEILLAGRSINNVPPHKRDIGMVFQNYALFPHMTVAENLAFPLSVRGMSKTDVKERVKRALSMVQLDAFAGRYPAQLSGGQQQRVALARALVFEPQLVLMDEPLGALDKQLREHMQMEIKHLHQRLGVTVVYVTHDQGEALTMSDRVAVFHQGEIQQIEPPRNLYEQPRNTFVANFIGEN--NRLSGQLLSCDGERCVVGLPRGEKVEALAV---NVGQPGEPVTLSIRPERVRLNGASES---CVNRFSGRVAEFVYLGDHVRVRLEVCGRDDFFVKQPIAELDPTLSVGDVVPLGWQVEHVRALDPLPAA |
| 1V43 Chain:A ((8-369)) | -----IKMVEVKLENLTKRFGN-FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQ------HMTVYENIAFPL--KKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVFVATFIGAPEMNILEVSVGDGYLEG------RGFRIELPQ-MDLLKDYVGKTVLFGIRPEHMTVEGV---HMKRTARLIGKVDFVEALGTDTILHVKFGDE-LVKVKLP-G--HIPIEPGREVKVIMDLDMIHVFDKDTEK |
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General information:
TITO was launched using:
| RESULT:
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Template: 1V43.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -178924 for 2703 contacts (-66.2/contact) +
2D Compatibility (PS) -37169 + (NN) -16506 + (LL) 2172
1D Compatibility (HY) -30400 + (ID) 7200
Total energy: -268027.0 ( -99.16 by residue)
QMean score : 0.498
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