Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MANYPQLNKEVQQGEIKVVMHTNKGDMTFKLFPNIAPKTVENFVTHAKNGYYDGITFHRVINDFMIQGGDPTATGMGGESIYGGAFEDEFSLNAFNLYGALSMANS-GPNTNGSQFFIVQMKEVPQNMLSQLADGGWPQPIVDAYGEKGGTPWLDQ--------KHTVFGQIIDGETTLEDIANTKVGPQ--DKPLHDVVIESIDVEE
3S6M Chain:A ((2-167))
-------------PGSMVELHTNHGVIKLELDEAKAPKTVENFLNYVKKGHYDGTIFHRVINGFMIQGGGFEPGLKQ--KPTDAPIANEANNGLKNDTYTIAMARTNDPHSATAQFFINVNDNE----------------------------FLNHSSPTPQGWGYAVFGKVVEGQDIVDKIKAVKTGS-HQDVPNDDVVIEKAVVV-
General information:
TITO was launched using:
RESULT:
Template:
3S6M.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -69968 for 1255 contacts (-55.8/contact) +
2D Compatibility (PS) -16292 + (NN) -5228 + (LL) 1588
1D Compatibility (HY) -5200 + (ID) 2800
Total energy: -97900.0 ( -78.01 by residue)
QMean score : 0.499
(partial model without unconserved sides chains):
PDB file :
Tito_3S6M.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3S6M-query.scw
PDB file :
Tito_Scwrl_3S6M.pdb
: