Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSKIVFFDVDGTLVGETKEIPASAKQAIAKLKENGVYVAIATGRGPFMLDEIRKE-LD-INSYICYNGQYVIFE-GKEIYAKPLPTESLERLITVASEHEHPIVFSGKDSMRANLPDHDRVTIG----MNSIKREYPKVDANYYKGRDIYQCLLFCDESY-DAY---YREEFKQ-YGFLRWHDVS-VDVCPADGSKAEGIKQMIKKLGFSMKDTYAFGDGLNDIAMLQTVGTGVAMGNGRDEVKAVADYVTSHVDDDGVYNALKQLKLI |
| 1NF2 Chain:A ((1-262)) | MYRVFVFDLDGTLLNDNLEISEKDRRNIEKLSR-KCYVVFASGRMLVSTLNVEKKYFKRTFPTIAYNGAIVYLPEEGVILNEKIPPEVAKDIIEYIKPLNVHWQAYIDDVLYSEKD-NEEIKSYARHSNVDYRVEPNLSEL--VSKMGTTKLLLIDTPERLDELKEILSERFKDVVKVF-KSFPTYLEIVPKNVDKGKALRFLRERMNWKKEEIVVFGDNENDLFMFEEAGLRVAMENAIEKVKEASDIVTLTNNDSGVSYVLERIS-- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 1NF2.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -130667 for 2064 contacts (-63.3/contact) +
2D Compatibility (PS) -27783 + (NN) -17352 + (LL) 336
1D Compatibility (HY) -15600 + (ID) 2850
Total energy: -193916.0 ( -93.95 by residue)
QMean score : 0.481
|
|
|