Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKENKYDDKHFFEQYSQMPRSKEGLQAAGEWHEFKKLLPDFHQKVVLDLGCGFGWHCIYAAEQGAKKVVGVDLSARMLTEAKHKTTS----PIVHYERRAMENIDIEPETYDIVLSSLALHYVA--SFNDICQKVNTNLITGGSFVFSVEHPIFTADGRQDWFTDEAGNKLHWPVDRYFNESIRTSHFLGEDVQKYHRTLTTYIQTLLKNGFQINSIIEPEPAPELKDLPEMQDEYRRPMMLIISATKN
3LCC Chain:A ((66-211))
-----------------------------------------PLGRALVPGCGGGHDVVAMASPER-FVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTW-RPTELFDLIFDYVFFCAIEPEMRPAWAKSMYELLKPDGELITLMYPITDHVG-----------------------------------GPPYKVDVSTFEEVLVPIGFKAVSVEENPHAI-------------------------
General information:
TITO was launched using:
RESULT:
Template:
3LCC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -86470 for 1010 contacts (-85.6/contact) +
2D Compatibility (PS) -14928 + (NN) -5394 + (LL) 6124
1D Compatibility (HY) -6000 + (ID) 1300
Total energy: -107968.0 ( -106.90 by residue)
QMean score : 0.397
(partial model without unconserved sides chains):
PDB file :
Tito_3LCC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3LCC-query.scw
PDB file :
Tito_Scwrl_3LCC.pdb
: