Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKLFDETNEFEAKYYRTIWYGYIDNEFAPELSDEIKQLIQRDLAEKTANPIEATHWVFYNETQAGDAIGDKVRSSIMVRYREEKFVVHYNVSDFQFVTVFDVATAFKDQLEQALNA----
2KC8 Chain:A ((1-95))
-------------MAYFLDFDERALKEWR-KLGSTVREQLKKKLVEVLESP------------RIEANKLRGMPDCYKIKLRSSGYRLVYQVIDEKVVVFVISVGKAEASEVYSEAVKRIL
General information:
TITO was launched using:
RESULT:
Template:
2KC8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -43515 for 596 contacts (-73.0/contact) +
2D Compatibility (PS) -9743 + (NN) -1890 + (LL) 2184
1D Compatibility (HY) -2000 + (ID) 550
Total energy: -55514.0 ( -93.14 by residue)
QMean score : 0.360
(partial model without unconserved sides chains):
PDB file :
Tito_2KC8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2KC8-query.scw
PDB file :
Tito_Scwrl_2KC8.pdb
: