Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKILLIGASGTLGSAVKDRLEK-KAEVITAGRHSG-----------------DVTVDITSIDSIKKMYE----QVGKVDAIVSATGSATFSPLTELTPEKNAVTISSKLGGQINLVLLGIDSLND--KGSFTLTTGIMMEDPIVQGASAAMANGAVTAFAKSAAIEM-PRGIRINTVSPNVLEESWDKL----------ESFFQGFVPVPAAKVARAFEKSVFGA---QTGESYKVY |
3GAF Chain:A ((12-247)) | AVAIVTGAAAGIGRAIAGTFAKAGASVVVTDLKSEGAEAVAAAIRQAGGKAIGLECNVTDEQHREAVIKAALDQFGKITVLVNNAGGGGPKPF-DMPMSDFEWAFKLNLFSLFRLSQLAAPHMQKAGGGAILNISSMAGENTNVRMASYGSSKAAVNHLTRNIAFDVGPMGIRVNAIAPGAIKTDALATVLTPEIERAMLKHTPLGRLGEAQDIANAALFLCSPAAAWISGQVLTVS |
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General information:
TITO was launched using:
| RESULT:
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Template: 3GAF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -89231 for 1615 contacts (-55.3/contact) +
2D Compatibility (PS) -20840 + (NN) 542 + (LL) 52
1D Compatibility (HY) -6000 + (ID) 1900
Total energy: -117377.0 ( -72.68 by residue)
QMean score : 0.472
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