Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSGLFITFEGPEGAGKTTVLQEIKNILTAEGLQVMATREPGGIDIAEQIREVILNENNILMDPKTEALLYAAARRQHLVEKVKPALEQGFIVLCDRFIDSSLAYQGYARGLGIDEVLSINEFAIGDMMPHVTVYFSIDPEEGLKRIYANGSREKNRLDLEKLDFHTKVQEGYQELMKRFPERFHSVDAGQSKDLVVQDVLKVIDEALKKIQL
4HLC Chain:A ((2-203))
--SAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMTREPGGVPTGEEIRKIVLEGN--DMDIRTEAMLFAASRREHLVLKVIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIK--------LDQEDLKFHEKVIEGYQEIIHNESQRFKSVNADQPLENVVEDTYQTIIKYLE----
General information:
TITO was launched using:
RESULT:
Template:
4HLC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -105053 for 1559 contacts (-67.4/contact) +
2D Compatibility (PS) -21129 + (NN) -8351 + (LL) 980
1D Compatibility (HY) -19600 + (ID) 5150
Total energy: -158303.0 ( -101.54 by residue)
QMean score : 0.516
(partial model without unconserved sides chains):
PDB file :
Tito_4HLC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4HLC-query.scw
PDB file :
Tito_Scwrl_4HLC.pdb
: