Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MMKHDIEKVLISEEEIQKKVKELGAELTSEYQD------TFPLAIGVLKGALPFMADLIKHIDT---YLEMDFMDVSSYGNSTVSSGEVKIIKDLDTSVEGRDILIIEDIIDSGLTLSYLVELFRYRKAKSIKIVTLLDKPSGRKADIKADFVGFEVPDAFVVGYGLDYAERYRNLPYIGVLKPAVYES
1PZM Chain:A ((21-202))
---PMSARTLVTQEQVWAATAKCAKKIAADYKDFHLTADNPLYLLCVLKGSFIFTADLARFLADEGVPVKVEFICAS-------------MLLDVRDSVENRHIMLVEDIVDSAITLQYLMRFMLAKKPASLKTVVLLDKPSGRKVDVLVDYPVITIPRAFVIGYGMDFAESYRELRDICVLKKE----
General information:
TITO was launched using:
RESULT:
Template:
1PZM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -141988 for 1218 contacts (-116.6/contact) +
2D Compatibility (PS) -17015 + (NN) -4303 + (LL) 1000
1D Compatibility (HY) -16800 + (ID) 3000
Total energy: -182106.0 ( -149.51 by residue)
QMean score : 0.551
(partial model without unconserved sides chains):
PDB file :
Tito_1PZM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PZM-query.scw
PDB file :
Tito_Scwrl_1PZM.pdb
: