Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAPTDRRVRADAARNRARVLEVAYQTFAADGLS-VPVDEIARRAGVGAGTVYRHFPTKEALFQAVIADRMHRIIDKGHALLK--SKHPGDALFAFLRSMVLQWGATDRGLVEALAGV---GIEISSAAPEAEADFLDLLTDLLRAAQRAGTVRPDVDVLEVKTLLVGCQAMQSYN-----------AELAAKVTDVALDGLRANRK
1T56 Chain:A ((22-214))
-----------GDDRELAILATAENLLEDRPLADISVDDLAKGAGISRPTFYFYFPSKEAVLLTLLDRVVNQADMALQTLAENPADTDRENMWRTGINVFFETFGSHKAVTRAGQAARATSVEVAELWSTFMQKWIAYTAAVIDAERDRGAAPRTLPAHELATALNLMNERTLFASFAGEQPSVPEARVLDTLVHIWVTSIYGE--
General information:
TITO was launched using:
RESULT:
Template:
1T56.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -94748 for 1235 contacts (-76.7/contact) +
2D Compatibility (PS) -19738 + (NN) -16090 + (LL) 912
1D Compatibility (HY) -8800 + (ID) 1200
Total energy: -139664.0 ( -113.09 by residue)
QMean score : 0.656
(partial model without unconserved sides chains):
PDB file :
Tito_1T56.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1T56-query.scw
PDB file :
Tito_Scwrl_1T56.pdb
: