Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGVPAKKKQQQGERSRESILDATERLMATKGYAATSISDIRDACGLAPSSIYWHFGSKEGVLAAMMERGAQRFFAAIPTWDEAHGP--------VEQRSERQLTELVSLQSQHPDFLRLFYLLSMERSQD--PAVAAVVRRVRNTAIARFRDSITHLLPSDIPPGKADLVVAELTAFAVALSDGVYFAGHLEPDTTDVERMYRRLRQALEALIPVLLEET---
2FBQ Chain:A ((2-214))
----------AQSETVERILDAAEQLFAEKGFAETSLRLITSKAGVNLAAVNYHFGSKKALIQAVFSRFLGPFCASLEKELDRRQAKPEAQHATLEDLLHLLVSQAMAVKPRSGNDLSIFMRLLGLAFSQSQGHLRKYLEEVYGKVFRRYMLLVNEAAPKLPPIELFWRVHFMLGAAAFSMSGIKALRAMAETDFGVNTSTEQVMHLMVPFFAAGMRAESGID
General information:
TITO was launched using:
RESULT:
Template:
2FBQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -79070 for 1401 contacts (-56.4/contact) +
2D Compatibility (PS) -21761 + (NN) -9507 + (LL) 664
1D Compatibility (HY) -8400 + (ID) 2000
Total energy: -120074.0 ( -85.71 by residue)
QMean score : 0.485
(partial model without unconserved sides chains):
PDB file :
Tito_2FBQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2FBQ-query.scw
PDB file :
Tito_Scwrl_2FBQ.pdb
: