Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDLTNELVDDRLNNPDAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERLKGRGRA-------------------------------DDTDDVILNRMKVYRDETAPLLEYYRD-------QLKTVDAVGTMDEVFARALRALGK
4JZK Chain:A ((1-213))
MRIILLGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRNGFLLDGFPRTIPQADAMKE----AGINVDYVLEFDVPDELIVDRIVGRRVHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKDDQEETVRKRLVEYHQMTAPLIGYYSKEAEAGNTKYAKVDGTKPVAEVRADLEKIL--
General information:
TITO was launched using:
RESULT:
Template:
4JZK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -57399 for 1338 contacts (-42.9/contact) +
2D Compatibility (PS) -19289 + (NN) -10167 + (LL) 480
1D Compatibility (HY) -16000 + (ID) 3950
Total energy: -106325.0 ( -79.47 by residue)
QMean score : 0.627
(partial model without unconserved sides chains):
PDB file :
Tito_4JZK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4JZK-query.scw
PDB file :
Tito_Scwrl_4JZK.pdb
: