Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRPLARLRGRRVVPQRSAGELDAMAAAGAVVAAALRAIRAAAAPGTSSLSLDEIAESVIRESGATPSF-LGYHGYPASICASINDRVVHGIPSTAEVLAPGDLVSIDCGAVLDGWHGDAAITFGVGALSDADEALSEATRESLQAGIAAMVVGNRLTDVAHAIETGTRAAELRYGRSFGIVAGYGGHGIGRQMHMDPFLPNEGAPGRGPLLAAGSVLAIEPMLTLGTTKTVVLDDKWTVTTADGSRAAHWEHTVAVTDDGPRILTLG
2GG2 Chain:A ((1-249))
-----------AISIKTPEDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHGYPKSVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGERLCRITQESLYLALRMVKPGINLREIGAAIQKFVEA------EGFSVVREYCGHGIGRGFHEEPQVLHYDSRETNVVLKPGMTFTIEPMVNAGKKEIRTMKDGWTVKTKDRSLSAQYEHTIVVTDNGCEILTL-
General information:
TITO was launched using:
RESULT:
Template:
2GG2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -125193 for 2143 contacts (-58.4/contact) +
2D Compatibility (PS) -27324 + (NN) -10895 + (LL) 1164
1D Compatibility (HY) -17200 + (ID) 4700
Total energy: -184148.0 ( -85.93 by residue)
QMean score : 0.463
(partial model without unconserved sides chains):
PDB file :
Tito_2GG2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2GG2-query.scw
PDB file :
Tito_Scwrl_2GG2.pdb
: