Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MILDMFRLDDKVAVITGGGRGLGAAIALAFAQAGADVLIASRTSSELDAVAEQIRAAGRRAHTVAADLAHPEVTAQLAGQAVGAFGKLDIVVNNVGGTMPNTLLSTSTKDLADAFAFNVGTAHALTVAAVPLMLEHSGGGSVINISSTMGRLAARGFAAYGTAKAALAHYTRLAALDLCP-RVRVNAIAPGSILTSALEVVAANDELRAPMEQATPLRRLGDPVDIAAAAVYLASPAGSFLTGKTLEVDGGLTFPNLDLPIPDL
3GAF Chain:A ((5-252))
---SPFHLNDAVAIVTGAAAGIGRAIAGTFAKAGASVVVTDLKSEGAEAVAAAIRQAGGKAIGLECNVTDEQHREAVIKAALDQFGKITVLVNNAGGGGPKPF-DMPMSDFEWAFKLNLFSLFRLSQLAAPHMQKAG-GGAILNISSMAGENTNVRMASYGSSKAAVNHLTRNIAFDVGPMGIRVNAIAPGAIKTDALATVLT-PEIERAMLKHTPLGRLGEAQDIANAALFLCSPAAAWISGQVLTVSGGGVQ----------
General information:
TITO was launched using:
RESULT:
Template:
3GAF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -164333 for 2147 contacts (-76.5/contact) +
2D Compatibility (PS) -26688 + (NN) -7787 + (LL) 592
1D Compatibility (HY) -14800 + (ID) 4950
Total energy: -217966.0 ( -101.52 by residue)
QMean score : 0.549
(partial model without unconserved sides chains):
PDB file :
Tito_3GAF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GAF-query.scw
PDB file :
Tito_Scwrl_3GAF.pdb
: