Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSAPVEALFQPFRLGALELPTRVVMAPMTRNFSPGGVPNAKVVEYYRRRAAAGVGLIVSEGTTVGHKAANGYPNVPRFYGEDALAGWKQVVDAVHAEGGRIVPQLWHVGSVRRLGVEPDASVPGYGPMEKAKD-----------GKVLVHGMSKADIQEVIAAFAQAARDAQAIGMDGVEIHGAHGYLIDQFFWEGSNQRDDEYGGSLANRSRFAVELVRAVRAAVGADFPIIFRFSQWKQQDYSARLVETPEGLREFLAPLVEAGVDIFHCSTRRFWIPEFEGSE-LNLAGWTRELTGKPTITVGNVGLDGSEFLQFFGKTDEVAQPASIDGLVERLDKGEFDLVAVGRALLVDPEWAVKVREGRIGDIKPFSREALASLV |
1ICP Chain:A ((11-358)) | --VDKIPLMSPCKMGKFELCHRVVLAPLTRQRSYGYIPQPHAILHYSQRSTNG-GLLIGEATVISETG-IGYKDVPGIWTKEQVEAWKPIVDAVHAKGGIFFCQIWHVGRVSNKDFQPNGEDP-ISCTDRGLTPQIMSNGIDIAHFTRPRRLTTDEIPQIVNEFRVAARNAIEAGFDGVEIHGAHGYLIDQFMKDQVNDRSDKYGGSLENRCRFALEIVEAVANEIGS-DRVGIRISPFAHY-NEAGDTNPTALGLYMVESLNKYDLAYCHVVEPRMKT-------CTESLVPMRKAYKGTFIVAGGY-DR------------EDGN--------RALIEDRADLVAYGRLFISNPDLPKRFELNA--PLNKYNRDTFYTSD |
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General information:
TITO was launched using:
| RESULT:
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Template: 1ICP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -170110 for 2988 contacts (-56.9/contact) +
2D Compatibility (PS) -35734 + (NN) -14327 + (LL) 920
1D Compatibility (HY) -19600 + (ID) 5200
Total energy: -244051.0 ( -81.68 by residue)
QMean score : 0.556
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