Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTLKGKTALVTGSTSGIGLGIALSLAEAGADLLLNGFGEVDA---ALAQV-RARGVRAEHHPADLSSPEQIGELMAFAERTFGGVDILVNNAGIQYVAPVQEFPTERWDAIIAINLSSVFHTTRLALPGMLARGWGRIVNIASTHGLVASAGKSAYVAAKHGVLGLTKSVALETARTPVTCNAICPGWVLTPLVQKQIDAR-TAEGVSPEQAEHDLLAEKQPSLAFVTPEQLGGLTLFLCSEAADQVRGAAWNMDGGWVAQ
3W8E Chain:A ((2-259))
--LKGKKAVVTGSTSGIGLAMATELAKAGADVVINGFGQPEDIERERSTLESKFGVKAYYLNADLSDAQATRDFIAKAAEALGGLDILVNNAGIQHTAPIEEFPVDKWNAIIALNLSAVFHGTAAALPIMQKQGWGRIINIASAHGLVASVNKSAYVAAKHGVVGLTKVTALENAGKGITCNAICPGWVRTPLVEKQIEAISQQKGIDIEAAARELLAEKQPSLQFVTPEQLGGAAVFLSSAAADQMTGTTLSLDGGWTAR
General information:
TITO was launched using:
RESULT:
Template:
3W8E.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -154151 for 2176 contacts (-70.8/contact) +
2D Compatibility (PS) -27224 + (NN) -8064 + (LL) 260
1D Compatibility (HY) -21600 + (ID) 7700
Total energy: -218479.0 ( -100.40 by residue)
QMean score : 0.545
(partial model without unconserved sides chains):
PDB file :
Tito_3W8E.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3W8E-query.scw
PDB file :
Tito_Scwrl_3W8E.pdb
: