Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MPRSPLFSQFPLHERLLKALESLSFSEPTPVQAAAIPKALE--GHDLRVTAQTGSGKTAAFLLPLLHRLLAEDKP-RSLARALILLPTRELAQQTLKEVERFAQFT----FIKACLITGGEDFKV-QGARLRKNPEIIIGTPGRLLEQRNAG-NLPLQDIEVLVLDEADRMLDMGFADDVLALANACP-------AERQTLLFSATHSGAGLNKVIAEVLREPQVLRLNQV----GELNENVRQQVITADD-VAH----KEQLLQWLLSNETYTKAIVFTNTRVSADRLTGRLIAN---QHKVFVLHGEKDQKDRKLAIERLKQGAVKILVATDVAARGLDVEGLDLVINFDMPRSGDEYVHRIGRTGRAGAEGLAISLICHGDWNLMSSVERYLKQNFERRNIKELKAAYQGPKKLKASGKAAGSKKKKQDRKGAAAKPAAKRKPAARPKAGPSAVVSADGMAPLKRKKPTAE |
3SQW Chain:A ((24-407)) | -------EEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDD-KVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELE---------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3SQW.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -172747 for 2987 contacts (-57.8/contact) +
2D Compatibility (PS) -39394 + (NN) -27010 + (LL) 4920
1D Compatibility (HY) -26800 + (ID) 5650
Total energy: -266681.0 ( -89.28 by residue)
QMean score : 0.545
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