Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVFQHDIYAGQQVLVTGGSSGIGAAIAMQFAELGAEVVALGLDADGVHA---PR--HPRIRREELDITDSQRLQRLFEAL---PRLDVLVNNAGISRD--REEYDLATFERVLRLNLSAAMLASQLARPLLAQ-RGGSILNIASMYSTFGSADRPAYSASKGAIVQLTRSLACEYAAERIRVNAIAPGWIDTPLGAGLKADVEATRRIMQRTPLARWGEAPEVASAAAFLCGPGASFVTGAVLAVDGGYLCA
3UF0 Chain:A ((25-272))
---GPFSLAGRTAVVTGAGSGIGRAIAHGYARAGAHVLAWGRTDGVKEVADEIADGGGSAEAVVADLADLEGAANVAEELAATRRVDVLVNNAGIIARAPAEEVSLGRWREVLTVNLDAAWVLSRSFGTAMLAHGSGRIVTIASMLSFQGGRNVAAYAASKHAVVGLTRALASEWAGRGVGVNALAPGYVVTANTAALRADDERAAEITARIPAGRWATPEDMVGPAVFLASDAASYVHGQVLAVDGGWLA-
General information:
TITO was launched using:
RESULT:
Template:
3UF0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -127244 for 2045 contacts (-62.2/contact) +
2D Compatibility (PS) -25523 + (NN) -12764 + (LL) 676
1D Compatibility (HY) -14400 + (ID) 4800
Total energy: -184055.0 ( -90.00 by residue)
QMean score : 0.580
(partial model without unconserved sides chains):
PDB file :
Tito_3UF0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3UF0-query.scw
PDB file :
Tito_Scwrl_3UF0.pdb
: