Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTALNVLIYPDDHLKVVCEPVTKVNDAIRKIVDDMFDTMYQEKGIGLAAPQVDILQRIITIDVEGDKQNQFVLINPEILASEGETGIEEGCLSIPGFRALVPRKEKVTVRALDRDGKEFTLDADGLLAICIQHEIDHLNGILFVDYLSPLKRQRIKEKLIKYKKQIAKS
1BSJ Chain:A ((1-166))
-SVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSENRDERLVLINPELLEKSGETGIEEGCLSIPEQRALVPRAEKVKIRALDRDGKPFELEADGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRLKA--
General information:
TITO was launched using:
RESULT:
Template:
1BSJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -98419 for 1273 contacts (-77.3/contact) +
2D Compatibility (PS) -17685 + (NN) -4192 + (LL) 244
1D Compatibility (HY) -19200 + (ID) 5450
Total energy: -144702.0 ( -113.67 by residue)
QMean score : 0.521
(partial model without unconserved sides chains):
PDB file :
Tito_1BSJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1BSJ-query.scw
PDB file :
Tito_Scwrl_1BSJ.pdb
: