Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPNYKLLYFNMRGRAEIIRYIFAYLDIKYEDHRIEQADWPKIKPTLPFGKIPVLEVEGLTIHQSLAIARYLTKNTDLAGKTALEQCQADAVVDTLDDFMSLFPWAEKDQDLKERMFNELLTHQAPRLLKDLDTYLGDKEWFIGNYVTWADFYWDICSTTLLVLKPGLLDIYPKLVSLRNKVQAIPAISAWILKRPQTKL
2VD0 Chain:B ((2-199))
-PNYKLTYFNMRGRAEIIRYIFAYLDIQYEDHRIEQADWPEIKSTLPFGKIPILEVDGLTLHQSLAIARYLTKNTDLAGNTEMEQCHVDAIVDTLDDFMSCFPWAEKKQDVKEQMFNELLTYNAPHLMQDLDTYLGGREWLIGNSVTWADFYWEICSTTLLVFKPDLLDNHPRLVTLRKKVQAIPAVANWIKRRPQTKL
General information:
TITO was launched using:
RESULT:
Template:
2VD0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -145627 for 1434 contacts (-101.6/contact) +
2D Compatibility (PS) -21109 + (NN) -8598 + (LL) 208
1D Compatibility (HY) -28000 + (ID) 7950
Total energy: -211076.0 ( -147.19 by residue)
QMean score : 0.576
(partial model without unconserved sides chains):
PDB file :
Tito_2VD0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VD0-query.scw
PDB file :
Tito_Scwrl_2VD0.pdb
: