Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MASPSLPGSDCSQIIDHSHVPEFEVATWIKITLILVYLIIFVM-GLLGNSATIRVTQVLQKKGYLQKEVTDHMVSLACSDILVFLIGMPMEFYS-----IIWNPLTTSSYTLSCKLHTFLFEACSYATLLHVLTLSFERYIAICHP---FRYKAVSGPCQVKLLIGFVWVTSALVALPLLFAMGTEYPLVNVPSHRGLTCNRSSTRHHEQPETSNMSICTNLSSRWTVFQSSIFGAFVVYLVVLLSVAFMCWNMMQVLMKSQKGSLAGGTRPPQLRKSESEESRTARRQTIIFLRLIVVTLAVCWMPNQIRRIMAAAKPKHDWTRSYFRAYMILLP--FSETFFYLSSVINPLLYTVSSQQFRRVFVQVLCCRLSLQHANHEKRLRVHAHSTTDSARFVQRPLLFASRRQSSARRTEKIFLSTFQSEAEPQSKSQSLSLESLEPNSGAKPANSAAENGFQEHEV |
4J4Q Chain:A ((27-323)) | --------------------PQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVT-VQHKK--LRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPT-------GCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRF----GENHAIMGVAFTWVMALACAAPPLVGWSRYIP-------EGMQCSCGIDYYTPHEETNN--------------ESFVIYMFVVHFIIPLIVIFFCY-----------GQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSD-----FGPIFMTIPAFFAKT----SAVYNPVIYIMMNKQFRNCMVTTLCCGKN----------------------------------------------------------------------------------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 4J4Q.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -181560 for 2235 contacts (-81.2/contact) +
2D Compatibility (PS) -29489 + (NN) -4669 + (LL) 10868
1D Compatibility (HY) -33200 + (ID) 3900
Total energy: -241950.0 ( -108.26 by residue)
QMean score : 0.243
|
|
|