Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MDSPSNATVPCGFLLQGFSEFPHLRPVLFLLLLGVHLATLGGNLLILVAVASMPSRQPMLLFLCQLSAIELCYTLVVVPRSLVDLSTPGHRRGSPISFLSCAFQMQMFVALGGAECFLLAAMAYDRYVAICHPLRYAAVVTPGLCARLALACCLRGLAVSVGLTVAI------------FHLPFCGSRLLLHFFCDITALLHLACTRSYADELPLLGACLVLLLLPSVLILASYGAI-AAALRRLR------CPKGRGKAASTCALHLAVTF-------------LH-YGCATFMYVRPRASYSPRLDRTLALVYTNVTPLLCPLIYSLRNREITAAL-----SRVLGRRRPGQAPGGDLREL |
| 4UHR Chain:A ((77-319)) | ----------------------------------------------------------------------------------------------------CLFIACFVLVLTASSIFSLLAIAIDRYIAIRIPLRYNGLVT-GTRAKGIIAICWV-LSFAIGLTPMLGWNNCGQPKEGKA---GCGEGQVACLFEDVVPMNYMVYFNFFA-----------CVLVPLLLMLGVYLRIFLAARRQLKQMESQPLPGERARSTLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFC--PDC-HAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIRSHVLRQQEPFKAAAA----- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 4UHR.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -142960 for 1207 contacts (-118.4/contact) +
2D Compatibility (PS) -21100 + (NN) -10540 + (LL) 8256
1D Compatibility (HY) -20400 + (ID) 3300
Total energy: -190044.0 ( -157.45 by residue)
QMean score : 0.143
|
|
|