Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MEFVLLGFSDIPNLHWMLFSIFLLMYLMILMCNGIIILLIKI---HPALQTPMYFFLSNFSLLEICYVTIIIPRMLMDIWTQKGNISLFA---CATQMCFFLMLGGTECLL-LTVMAYDRYVAICKPL-QYPLVMNHKV------------CIQLIIASWTITIPVVIGETCQI-FLLPFCGTNTINHFFCDIPPILKLACGNIFVNEITVHVVAVVFITVPFLLIVVSYGKIISNILKLSSARGKA----KAFSTCSSHLIVVILFF------GAGTITYLQPKPHQFQRMGKL---ISLFYTILIPTLNPIIYTLRNKDIMVALRKLLAKLLT |
1GZM Chain:A ((38-313)) | ---------------WQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLF---MVFGGFTTTLYTSLHGYFVFGPTGCNLE-GFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETN----------------------NESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYI--FTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKN |
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General information:
TITO was launched using:
| RESULT:
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Template: 1GZM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -234805 for 1807 contacts (-129.9/contact) +
2D Compatibility (PS) -24115 + (NN) -4534 + (LL) 3056
1D Compatibility (HY) -6400 + (ID) 800
Total energy: -267598.0 ( -148.09 by residue)
QMean score : 0.109
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