Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MEMRNTTPDFILLGLFNHTRAHQVLFMMVLSIVLTSLFGNSLMILLIHWDHRLHTPMYFLLSQLSLMDMMLVSTTVPKMAADYLTGSKAISRAGCGVQIFFLPTLGGGECFLLAAMAYDRYAAVCHPLRYPTLMSWQLCLRMTMSCWLLGAADGLLQAVVTLSFPYCGAHEIDHFFCETPVLVRLAC--ADTSVFENAMYICCVLMLLVPFSLILSSY-GLILAAVLHMRSTEAR---KKAFATCSSHVAVVGLF-------YGAAIFTYMRPKSHRSTNHDKVVSAFYTMFTPLLNPLIYSVKNSEVKGALKRWLGTCVNIKHQQNEAHRSR |
| 2YDV Chain:A ((14-301)) | -----------------------------LAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSAAAADILVGVLAIP-FAIAISTGFCAACH-GCLFIACFVLVLTASSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTP---MLGWNNCGQPKEGKAHSQGCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFLAARRQLKQMESQSTLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIRSHVLRQQEPFKAAAAE |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2YDV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -207559 for 2041 contacts (-101.7/contact) +
2D Compatibility (PS) -27220 + (NN) -10234 + (LL) 3520
1D Compatibility (HY) -20800 + (ID) 3300
Total energy: -265593.0 ( -130.13 by residue)
QMean score : 0.301
|
|
|