Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MVNQSSPMGFLLLGFSEHPALERTLFVVVFTSYLLTLVG---NTLIILLSVLYPRLHSPMYFFLSDLSFLDL-----CFTTSCVPQML-VNLWGPKKTISFLGCSVQLFIFLSLGTTECILLTVMAFDRYVAVCQPLHYATIIHPRLCWQLASVAWVMSLVQSIVQTPSTLHLPFCPHQQIDDFLCEVPSLIRLSCGDTSY-------NEIQLAVSSVIFVVVPLSLILASYGATAQAVLRINSATAWRKAFGTCSSHLTVVTLFYSSVIAVYLQPKNPYA-------QGRGKFFG-------LFYAVGTPSLNPLVYTLRNKEIKRAL-------RRLLGKERDSRESWRAA |
| 2I35 Chain:A ((45-332)) | --------------------------------FLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPT------GCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVA-FTWVMALA--------------CAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYG---QLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKN---DDE--------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2I35.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -68336 for 2118 contacts (-32.3/contact) +
2D Compatibility (PS) -24649 + (NN) 39 + (LL) 5136
1D Compatibility (HY) -23600 + (ID) 3500
Total energy: -114910.0 ( -54.25 by residue)
QMean score : 0.196
|
|
|