Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMVTEFIFLGLSDSQELQTFLFMLFFVFYGGIVFGNLLIVITVVSDSHLHSPMYFLLANLSLIDLSLSSVTAPKMITDFFSQRKVISFKGCLVQIFLLHFFGGSEMVILIAMGFDRYIAICKPLHYTTIMCGNACVGIMAVAWGIGFLHSVSQLAFAVHL-PFCGPNEVDSFYCDLPRVIK----------LAC--TDTYRLDIMVIANSGVLTVCSFVLLIISYTIIL---------MTIQHCPLDKSSK-------------------ALSTLTAHITVVLLFFGP-CVFIYAWPFPIKSLDKFLAVFYSVITPLLNPIIYTLRNKDMKTAIRRLRKWDAHSSVKF
2YDV Chain:A ((21-302))-------------------------------ILGNVLVCWAVWLNSNLQNVTNYFVVSAAAADILVGVLAIPFAIA--ISTGFCAACHGCLFIACFVLVLTASSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICW---------VLSFAIGLTPMLGWNN-----CGQPKEGKAHSQGCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFLAARRQLKQMESQ--------STLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWLM-------YLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIRSHVLRQQEP


General information:
TITO was launched using:
RESULT:

Template: 2YDV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -206029 for 1721 contacts (-119.7/contact) +
2D Compatibility (PS) -23850 + (NN) -7167 + (LL) 4056
1D Compatibility (HY) -27200 + (ID) 3500
Total energy: -263690.0 ( -153.22 by residue)
QMean score : 0.176

(partial model without unconserved sides chains):
PDB file : Tito_2YDV.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-2YDV-query.scw
PDB file : Tito_Scwrl_2YDV.pdb: