Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | METANYTKVTEFVLTGLSQTPEVQLVLFVIFLSFYLFIL-----PGNILIICTISLDPHLTSPMYFLLANLAFLDIWYS----SITAPEMLIDFFVERKIISFDGCIAQLFFLHFAGASEMFLLTVMAFDLYTAICRPLHYATIMNQRLCCILVALSWRGGFIHSIIQVALIVRLPF-CGPNELDSYFCDITQVVRIACANTF--PEELV-----MICSSGLISVVCLIALLMSYAFLLALFKKLSGSGEN---TNRAMSTCYSHITIVVLMF--------GPSIYIYARPFDSFS-LDKVVSVFNTLIFPLRNPIIYTLRNKEVKAAMRKLVTKYILCKEK |
3CAP Chain:A ((40-317)) | -------------------------------LAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFV----FGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMS----------------NFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKN---- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3CAP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -220256 for 1789 contacts (-123.1/contact) +
2D Compatibility (PS) -25144 + (NN) -5785 + (LL) 6188
1D Compatibility (HY) -22000 + (ID) 3200
Total energy: -270197.0 ( -151.03 by residue)
QMean score : 0.196
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