Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MAEMNLTLVTEFLLIAFTEYPEWALPLFLLFLFMYLITVLG---NLEMIILILMDHQLHAPMYFLLSHLAFMDVCYSSITVPQMLAVLLEHGAALSYTRCAAQFFLFTFFGSIDCYLLALMAYDRYLAVCQPLLYVTILTQQARLSLVAGAYVAGLISALVRTVSAFTLSFCGTSEIDFIFCDLPPLLKLTCG--------ESYTQEVLIIMFAI-FVIPASMVVILVSYLFIIVAIMGIPAGSQ-AKTFSTCTSHLTAVSL------------FFGTLIFMYLRGNSDQSSEKNRVVSVLYTEVIPMLNPLIYSLRNKEVKEALRKILNRAKLS |
| 3C9L Chain:A ((39-325)) | ----------------------------MLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMG-VAFTWVMALACAAPPLV--------GWSRY------IPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIP--LIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSD-FGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKND |
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General information:
TITO was launched using:
| RESULT:
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Template: 3C9L.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -244856 for 1996 contacts (-122.7/contact) +
2D Compatibility (PS) -27260 + (NN) -13433 + (LL) 4576
1D Compatibility (HY) -24000 + (ID) 3200
Total energy: -308173.0 ( -154.40 by residue)
QMean score : 0.337
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