Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MASKDFAIGMILLSQIMVGFLGNFFLLYHYSFLCFTRGMLQSTDLILKHLTIANSLVILSKGIPQTMAAFGLKDSLSDIGCKFVFYVHRVGRAVCVGNACLLSVFQVITISPSEFRWAELKLHAHKYIRSFILVLCWILNTLVNITVLLHVTGKWNSINSTKTNDYGYCSGGSRSRIPH-SLHIVLLSSLDVLCLGLMTLASGSMVFILHRHKQQVQHIHGT------------------------------------------------------------------------------------------------------------------------------------------------------NLSARSSPESRVTQSILVLVSTLCY-FTRSPPSLHMSLFP------------NPSWWLLNTSALITACFPMVSPFVLMSRHPRIPRLGSACCGRNPQFPKLVR |
| 3ODU Chain:A ((48-501)) | ----KIFLPTIYSIIFLTGIVGNGLVILVMGYQ---KKLRSMTDKYRLHLSVADLLFVIT--LPFWAVDAVANWYFGNFLCKAVHVIYTVNLYSSVWILAFISLDRYLAIVHATNSQ---RPRKLLAEKVVY-VGVWIPALLLTIPDFIFAN-VSE------ADDRYICDRFYPNDLWVVVFQFQHIMVGLILPGIVILSCYCIIISKLSHSGSNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYGSKGHQKRKALKTTVILILAFFACWLPYYIGISIDSFILLEIIKQGCEFENTVHKWISITEALAFFHCCLNPILYAFLGAKFKTSAQHALTSGRPLEVLFQ |
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General information:
TITO was launched using:
| RESULT:
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Template: 3ODU.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -163813 for 2045 contacts (-80.1/contact) +
2D Compatibility (PS) -29008 + (NN) -5564 + (LL) 1132
1D Compatibility (HY) -16400 + (ID) 1600
Total energy: -215253.0 ( -105.26 by residue)
QMean score : 0.182
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