Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MCFMFLEFLFSTLFIMLIMVLSVFQIILVVILVILVLLQPPGSSSLSGFSNSQQGFNSIIPVKSSANPLNKITAIVAGLFIMNTLLLSGLCSKDVHKKSIAEKIILEKQQENESTSVPFEN
3DL8 Chain:E ((8-72))
-----------------------LFVIIAVVLIISTLLQKGRGDVGAAFGGGMG--QSIFGVGGVETILTKATYWLGALFLVLALLLSVI-------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3DL8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -17108 for 323 contacts (-53.0/contact) +
2D Compatibility (PS) -6909 + (NN) -3579 + (LL) 5472
1D Compatibility (HY) -8400 + (ID) 200
Total energy: -30724.0 ( -95.12 by residue)
QMean score : 0.040
(partial model without unconserved sides chains):
PDB file :
Tito_3DL8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3DL8-query.scw
PDB file :
Tito_Scwrl_3DL8.pdb
: