Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MDIIKFVLLLPTILLILTAGVYLSVRLKWLQIFRLPHALSLIGVKKGENKFSSIAALFTILGGNLG-----VGNISGTAVALKTGGPGSILWMAIIVIITSVIKYVTCYLSIKNRKKKNGRFIGGPMAYMVDAFNSRKATVVFLVIMIMVSIIVGNLVQVNSLSIPLDMINVPVVTGGIIMTIIFFVVAALSLK---KIKIFISAMIPIMTISYLTLCGIILFK-FSENILPSLKLITSSFFTTSSFNFGLSLGLVLEMLTIIQVGTLRGIFAT-DIGLGLEGIVHSSIIPKKNNNKFIIEQSLITIISPFIVAFIVFITTM----VLLVTD----SWVTGLESTNMCIF-----AFRKAMNWPYIDYLIMAIMFCFA---FTTIFTWFFCSKQTIRYVSQNDKYTKIWIIIFTAVIPLGSISKVQLLWDVADISIAALLFINILAILKLTSRDPEVFTV-----SSRYLKLNQ--PIFNKNKTRNWLAILILRG---- |
4EPQ Chain:A ((34-472)) | ----DYQFPLPQK----------NSELWIIQKKTLQDLSSG---KQKLDSFQSLESILEILRDSKNQNDEKYFNLKAVFEQLDKEEQTYFLEQFIPKICQLVLK-------IKKKQLKNQIPKESK---IYEAAFSREEISYYVSCMFLC------ILKDQDRKIYKDFRLIYLKD----------LVQQINIRRQEKIKCFYEYLKQALDFSEKESKEVVIFQRINCGQLEDYENWVDKLKAIKLKNVQLTDDKLIEDFP----GTLQVDFANCDIGGGILG------------NGLVQEEIRFCVCPEMLVSLLVFDQSMEANEVIIMKGIKQYSDYQGYSNSFRFVKMGNSKIQKQKRTNPQTILAIDALCFNSSDNQFSEVNVSRELNKSYMGF-KQEDQLKTISTGKWGCGAFLGVFDLKFAIQWIASSRSNKKMIICTFQDEQTTKQIQQVFDLYKQKNASIFLKLVMDYPNSKYMEDYTLLEYLIELGKEKA |
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General information:
TITO was launched using:
| RESULT:
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Template: 4EPQ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -374285 for 3231 contacts (-115.8/contact) +
2D Compatibility (PS) -41293 + (NN) 3044 + (LL) 5904
1D Compatibility (HY) -18000 + (ID) 4150
Total energy: -428780.0 ( -132.71 by residue)
QMean score : 0.183
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