Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIKLFFIFTLLFFDASTYCSCEDIIESIEICKEYTCQQYIGNEDFIEHKILGLSSKDLCVYIEKQDNDEMVCHHSKYGMMMEKKYLESIFKVGNQEINDFIDIANLRAKECFFISNQKTSYTNRDYIIKEAVESNFDVLSQYNDIKSIFFDKESVNKMVSEMKKFNLRSSRAAKEEILDNFNSKVVSLDSILYLSPDTWKIWVNRKLFTNTKNLKVYSVTENYVTFVWTVNQKMTKKQPNDSKNVYFGYGNIMFTLYPKQKFDLDSLSIK
2B39 Chain:A ((1545-1617))
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------TRLIQKKLEDDFDEYIMVIENIIKSGSDEVQVKQERKFISHIKCREALKLKEGAHYLVWGVSSDLWGEKPKISYIIGKDTWVELWPEAEECQDEENQKQCE
General information:
TITO was launched using:
RESULT:
Template:
2B39.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 12233 for 406 contacts (30.1/contact) +
2D Compatibility (PS) -7943 + (NN) -1161 + (LL) 13408
1D Compatibility (HY) -3600 + (ID) 700
Total energy: 12237.0 ( 30.14 by residue)
QMean score : -0.006
(partial model without unconserved sides chains):
PDB file :
Tito_2B39.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2B39-query.scw
PDB file :
Tito_Scwrl_2B39.pdb
: