Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIGQVLSNDDWNRYKKEGFLVTKFGSLIDYVINWARSGSLWPMTFGLACCAVEMMHTASSRYDLDRYGIMFRASPRQADVMIVAGTLTNKMAAALRKVYDQMADPKYVVSMGSCANGGGYYHYSYSVVR----------GCDRIVPVDIYVPGCPPTAEALLYGMLCLQNKIKRTQNI
3AYX Chain:B ((101-165))
------------------------------------------------------------------------------------------FSEQLKRMAD---DAKAIISWGSCASWGCVQAAKPNPTQATPVHKFLGGGYDKPI---IKVPGCPPIAEVMTGVITYMLTFDRIPELD
General information:
TITO was launched using:
RESULT:
Template:
3AYX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -21421 for 262 contacts (-81.8/contact) +
2D Compatibility (PS) -6236 + (NN) -5951 + (LL) 6736
1D Compatibility (HY) -2000 + (ID) 1050
Total energy: -29922.0 ( -114.21 by residue)
QMean score : 0.235
(partial model without unconserved sides chains):
PDB file :
Tito_3AYX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3AYX-query.scw
PDB file :
Tito_Scwrl_3AYX.pdb
: