Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFAVIETGGKQYLVKKGSVIKVEKLEAEEGKEVEIDKAVCLSGNGLSYLTDA---TVKAEVLEQCRGEKIIIFKKKRRKNYRRKTGHRQYITVLRINEINLQK
3PIP Chain:O ((5-95))
----IQTGGKQYRVSEGDVIRVESLQGEAGDKVEL-KALFVGGEQTVFGEDAGKYTVQAEVVEHGRGKKIYIRKYKSGVQYRRRTGHRQNFTAIKILGI----
General information:
TITO was launched using:
RESULT:
Template:
3PIP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 9477 for 466 contacts (20.3/contact) +
2D Compatibility (PS) -8907 + (NN) 7266 + (LL) 748
1D Compatibility (HY) -6400 + (ID) 2300
Total energy: -116.0 ( -0.25 by residue)
QMean score : 0.190
(partial model without unconserved sides chains):
PDB file :
Tito_3PIP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3PIP-query.scw
PDB file :
Tito_Scwrl_3PIP.pdb
: