Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MNKAERQNLIITAIQQNKKMTALELAKYCNVSKRTILRDIDDLENQGVKIYAHYGKNGGYQIQQAQSKIALNLSETQLSALFLVLNESQSYSTLPYKSEINAIIKQCLSLPQTRLRKLLKRMDFYIKFDDTQHMTLPMLFSDILIYCTERNVMLVDHRVDDNIKAENVIFIGLLCKHGHWHAVIYDIAQD-KTAELEIENIIDISYSFGKTIQTRDISIDNYHQFLNPIDS |
| 3O4J Chain:A ((5-84)) | ---------------------------------------------------------------------------------------------------------------------------------------MPVEFSRI-VRDVERLIAVEKYSLQGVVDGDKLLVVGF--SEGSVNAYLYDGGETVKLNREPINSVLDPHYGVGRVILVRDVS------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3O4J.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -16924 for 446 contacts (-37.9/contact) +
2D Compatibility (PS) -7942 + (NN) 2773 + (LL) 11920
1D Compatibility (HY) -6800 + (ID) 1000
Total energy: -17973.0 ( -40.30 by residue)
QMean score : -0.097
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