Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MQALKSLLEVITKLQNLGGYLMHIAIFIIFIWIGGLKFVPYEAEGIAPFVANSPFFSFMYKFEKPAYKQHKMSESQSMQEEMQDNPKIVEN---KEWHKENRTYLVAEGLGITIMILGILVLLGLWMPLMGVVGGLLVAGMTITTLSFLFTTPEVFVNQHFPWLSGAGRLVVKDLALFAGGLFVAGFDAKRYLEGKGFCLMDRSSVGIKTKCSSGCCS |
2AFH Chain:B ((260-306)) | -------------------------------------------------------------LDTPADGQFRMYAGGTTQEEMKDAPNALNTVLLQPWHLE-KTKKFVEGTWKHEVPKLNIPMGLDWTDEFLMKVSEISGQPIPASLTKERGRLVDMMTDSHTWLHGKRFALWGDPDFVMGLVKFLLELGCEPVHILCHNGNKRWKKAVDAILAASPYG |
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General information:
TITO was launched using:
| RESULT:
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Template: 2AFH.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 16373 for 158 contacts (103.6/contact) +
2D Compatibility (PS) -4550 + (NN) -1289 + (LL) 5440
1D Compatibility (HY) -400 + (ID) 800
Total energy: 14774.0 ( 93.51 by residue)
QMean score : 0.180
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