Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKALMFTLLGVSLAFATPYTIDKA--NSSVWYEVKHFTFNETRGAFDNFDGKIDLEPNTKVLSVFEGNIDLKSVNTRDRKRDNHLKTADFFDVVKYPKGSFKMTKYEDG----KIHGDLTLRGVTKPVVLEAKIQAPLQNPMNKKEFMVLQAEGKINRKDFGIGKTFSNAVVGDEVKIEIKLEAYAQ
1Y0G Chain:A ((23-190))
-----------------ADYKIDKEGQHAFVNFRIQHLGYSWLYGTFKDFDGTFTFDEKNPAADKVNVTINTTSVDTNHAERDKHLRSADFLNTAKYPQATFTSTSVKKDGDELDITGDLTLNGVTKPVTLEAKLIGQGD-DPWGGKRAGFEAEGKIKLKDFNIKTDLG--PASQEVDLIISVEGVQQ
General information:
TITO was launched using:
RESULT:
Template:
1Y0G.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -35087 for 1138 contacts (-30.8/contact) +
2D Compatibility (PS) -16711 + (NN) 5859 + (LL) 1972
1D Compatibility (HY) -8400 + (ID) 2850
Total energy: -55217.0 ( -48.52 by residue)
QMean score : 0.409
(partial model without unconserved sides chains):
PDB file :
Tito_1Y0G.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1Y0G-query.scw
PDB file :
Tito_Scwrl_1Y0G.pdb
: