Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LYKLIAIDIDGTLLTDDHKVTDEVKEAIRQAKLKGVKVVLCTGRPLVGVENYLTELELREEGDYVISFNGAFVQDTFTKEVISHLTLGIEDLKDIYEVSLNSNLHMHFFDDKALYTPNREIGKYTIVEAYLTGSQLIYKEIENVP-EDFIMSKAMFIEEAPELEVGIAKIPESFREKYHLVRSTPFYLEILNRDASKGNAVKELSEKLGIKQSEVICIGDQENDVTMLEFAGLGIAMGNAPERIKQLADYTTASNNDSGVAKAIQKFVLDK
2QYH Chain:A ((4-256))
--KIVFFDIDGTLLDEQKQLPLSTIEAVRRLKQSGVYVAIATGRAPFMFEHVRKQLGI----DSFVSFNGQYV--VFEGNVLYKQPLRREKVRALTEEA-HKNGHPLVFMDAE--KMRASIGDHPHIHVSMASLKFAHPPVDPLYYENKDIYQALLFCRAEEEEPYVRNYPE-----FRFVRWHDVSTDVLPAGGSKAEGIRMMIEKLGIDKKDVYAFGDGLNDIEMLSFVGTGVAMGNAHEEVKRVADFVTKPVDKEGIWYGLKQLQL--
General information:
TITO was launched using:
RESULT:
Template:
2QYH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -146424 for 2156 contacts (-67.9/contact) +
2D Compatibility (PS) -27124 + (NN) -12290 + (LL) 1252
1D Compatibility (HY) -16000 + (ID) 3800
Total energy: -204386.0 ( -94.80 by residue)
QMean score : 0.434
(partial model without unconserved sides chains):
PDB file :
Tito_2QYH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2QYH-query.scw
PDB file :
Tito_Scwrl_2QYH.pdb
: