Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | LKKLTYVIITGLVLVFIAGAFWITNSTNQSDQKATQTEPIKKISPANVKTISSEAKKTLNSLASSGADKASISDLKQLIKELKSYPTEKNDSGVYLQNLTACLEAVKSYTTGKADEKTLGKVYPAFLASEQKLSAIEKTNQYDWFYAAAATNQQGLKEKGVVTLTMVGDNSFGTYPETPEHLKFDNVFQKNNGNNTYVYKNCLPWFKSDDYTIINAESAFTNATKAENKMWRIKSDPAHVAFLPASGVDAANLANNHTMDYF--QVGYDDTLKAFKENNIPVFNAD-----APLETTIKGMKTVLLGYDCRMSQQS---PAYLERIVKDVKKYKKEDTLVIVNMHWGVEYRETPTDYQTQFGHAILDAGADIIMGSHPHRLESVEKYKD-----------KYIV-Y---------SMGDFAFG--ADPT----LLSRMTSMFQLRFTKEDNKIVLKDISIVPTYENSDGSTTENNYQPLPVFGDDAKKIVDELNRISKPIEGGVTEYTYFDPF |
| 1T71 Chain:A ((2-267)) | --------------------------------------------------------------------------------------------------------------------------------------------------------------MNSIKFIFLGDVYGKAGRN----------------IIKNNLAQLKSKY-QADLVIVNAENTTHGKG----------LSLKHYEFLKEAGVNYITMG-NHTWFQKLDLAVVINKKDLVRPLNLDTSFAFHNLGQGSLVFEFNKAKIRITNLLGTSVPLPFKTTNPFKVLKELILKR--DCDLHIVDFHAETTSE------KNAFCMA-FDGYVTTIFGTHTHVPSADLRITPKGSAYITDVGMCGPGFGSVIGANPEQSIRLFCAGSREHFEVSKCGAQLNGVFFEVDVN--TKK----VIKTEAIRIVE---------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1T71.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -47679 for 1829 contacts (-26.1/contact) +
2D Compatibility (PS) -23857 + (NN) -3307 + (LL) 15280
1D Compatibility (HY) -800 + (ID) 1850
Total energy: -62213.0 ( -34.01 by residue)
QMean score : 0.183
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