Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LLSNKQTVLCIEEMAKMFPAAHCELVHKNTFELLVAVVLSAQCTDVLVNRVTASLFEKYHSPEDYLAVPLEELMEDIRSIGLYRNKAKNIQGLSEKILTEFNGEVPKTHAELESLPGVGRKTANVVLSVGFGVPAIAVDTHVERISKR-LGICRWKDSVVEVEETLKRKLPKELWSDA------------HHYMIFFGRYHCKARNPECPTCPLLYLCREGKKQAKVRGFDG
1KG2 Chain:A ((26-208))
-------------------------IDKTPYKVWLSEVMLQQTQVATVIPYFERFMARFPTVTDLANAPLDEVLHLWTGLGYYA-RARNLHKAAQQVATLHGGKFPETFEEVAALPGVGRSTAGAILSLSLGKHFPILDGNVKRVLARCYAVSGWPG---------KKEVENKLWSLSEQVTPAVGVERFNQAMMDLGAMICTRSKPKCSLCPLQNGC--------------
General information:
TITO was launched using:
RESULT:
Template:
1KG2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -67324 for 1228 contacts (-54.8/contact) +
2D Compatibility (PS) -18193 + (NN) -8847 + (LL) 4100
1D Compatibility (HY) -12000 + (ID) 2300
Total energy: -104564.0 ( -85.15 by residue)
QMean score : 0.455
(partial model without unconserved sides chains):
PDB file :
Tito_1KG2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1KG2-query.scw
PDB file :
Tito_Scwrl_1KG2.pdb
: