Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MRCSTKEMRLVYRDFLLQANQENKQITVLEADLSSSMSTNVLASEFGKRYINLGIMEAEMVGLAAGLAIKG--YKPYLHTFGPFASRRVFDQVFLSLGYSQLSA------TIIGSDAGVSAEMNGGTHMPFEELGLLRLIPKATIFEVSDDIQFEAILKQTLSIDGLKYIRTIRKAPTAVYEGC--EDFSKG--FIQLRQGKDIALVASGIMVSRAIEAADYLKELGIEASVIDL-----FKIKPLPEELKPLLIDQSIVTIENHNRIGGIGSALCEWLSMEKDTTVSRMGIDERFGQVGQMKYLLEEYGLAVKDIVEHCKSIYKS |
| 1GPU Chain:A ((404-661)) | ------------------------------------------SGNYSGRYIRYGIREHAMGAIMNGISAFGANYKPYGGTFLNFVS--------YAAGAVRLSALSGHPVIWVATHDSIGVGEDGPTHQPIETLAHFRSLPNIQVWRPADGNEVSAAYKNSLESKHTPSIIALSRQNLPQLEGSSIESASKGGYVLQDVANPDIILVATGSEVSLSVEAAKTLAAKNIKARVVSLPDFFTFDKQPLEYRLSVLPDNVPIMSVE-------VLATTC-WGKYAHQS----FGID-RFGASGKAPEVFKFFGFTPEGVAERAQKTIAF |
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General information:
TITO was launched using:
| RESULT:
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Template: 1GPU.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -129890 for 1972 contacts (-65.9/contact) +
2D Compatibility (PS) -26235 + (NN) -6638 + (LL) 5012
1D Compatibility (HY) -10000 + (ID) 3750
Total energy: -171501.0 ( -86.97 by residue)
QMean score : 0.445
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